| concept | |
| Alpha_complex | |
| SimplicialComplexForAlpha.h | |
| SimplicialComplexForAlpha3d.h | |
| Bottleneck_distance | |
| Persistence_diagram.h | |
| Cech_complex | |
| SimplicialComplexForCech.h | |
| SimplicialComplexForMEB.h | |
| Coxeter_triangulation | |
| FunctionForImplicitManifold.h | |
| IntersectionOracle.h | |
| SimplexInCoxeterTriangulation.h | |
| TriangulationForManifoldTracing.h | |
| Persistence_matrix | |
| FieldOperators.h | Contains the concept for the matrix field operators |
| PersistenceMatrixColumn.h | Contains the concept for the matrix columns |
| PersistenceMatrixOptions.h | Contains the concept for the matrix options |
| Persistence_representations | |
| Real_valued_topological_data.h | |
| Topological_data_with_averages.h | |
| Topological_data_with_distances.h | |
| Topological_data_with_scalar_product.h | |
| Vectorized_topological_data.h | |
| Persistent_cohomology | |
| CoefficientField.h | |
| FilteredComplex.h | |
| PersistentHomology.h | |
| Rips_complex | |
| SimplicialComplexForRips.h | |
| Simplex_tree | |
| FiltrationValue.h | |
| IndexingTag.h | |
| SimplexKey.h | |
| SimplexTreeOptions.h | |
| VertexHandle.h | |
| Skeleton_blocker | |
| SkeletonBlockerDS.h | |
| SkeletonBlockerGeometricDS.h | |
| Witness_complex | |
| SimplicialComplexForWitness.h | |
| Zigzag_persistence | |
| ZigzagOptions.h | Contains Gudhi::zigzag_persistence::ZigzagOptions and Gudhi::zigzag_persistence::FilteredZigzagOptions concept |
| doc | |
| Alpha_complex | |
| Intro_alpha_complex.h | |
| Bitmap_cubical_complex | |
| Gudhi_Cubical_Complex_doc.h | |
| Bottleneck_distance | |
| Intro_bottleneck_distance.h | |
| Cech_complex | |
| Intro_cech_complex.h | |
| Collapse | |
| intro_edge_collapse.h | |
| common | |
| examples.h | |
| file_formats.h | |
| installation.h | |
| Coxeter_triangulation | |
| intro_coxeter_triangulation.h | |
| Nerve_GIC | |
| Intro_graph_induced_complex.h | |
| Persistence_matrix | |
| Intro_field_elements_and_operators.h | |
| Intro_persistence_matrix.h | |
| Persistence_representations | |
| Persistence_representations_doc.h | |
| Persistent_cohomology | |
| Intro_persistent_cohomology.h | |
| Rips_complex | |
| Intro_rips_complex.h | |
| Simplex_tree | |
| Intro_simplex_tree.h | |
| Spatial_searching | |
| Intro_spatial_searching.h | |
| Subsampling | |
| Intro_subsampling.h | |
| Tangential_complex | |
| Intro_tangential_complex.h | |
| Toplex_map | |
| Intro_Toplex_map.h | |
| Witness_complex | |
| Witness_complex_doc.h | |
| Zigzag_persistence | |
| Intro_zigzag_persistence.h | |
| example | |
| Contraction | |
| Garland_heckbert | |
| Error_quadric.h | |
| Witness_complex | |
| generators.h | |
| include | |
| gudhi | |
| Active_witness | |
| Active_witness.h | |
| Active_witness_iterator.h | |
| Alpha_complex | |
| Alpha_kernel_d.h | |
| Contraction | |
| policies | |
| Contraction_visitor.h | |
| Cost_policy.h | |
| Dummy_valid_contraction.h | |
| Edge_length_cost.h | |
| First_vertex_placement.h | |
| Link_condition_valid_contraction.h | |
| Middle_placement.h | |
| Placement_policy.h | |
| Valid_contraction_policy.h | |
| Edge_profile.h | |
| Coxeter_triangulation | |
| Cell_complex | |
| Cell_complex.h | |
| Hasse_diagram_cell.h | |
| Query_result.h | |
| Fields | |
| Multi_field.h | Contains the Gudhi::persistence_fields::Multi_field_element class |
| Multi_field_operators.h | Contains the Gudhi::persistence_fields::Multi_field_operators class |
| Multi_field_shared.h | Contains the Gudhi::persistence_fields::Shared_multi_field_element class |
| Multi_field_small.h | Contains the Gudhi::persistence_fields::Multi_field_element_with_small_characteristics class |
| Multi_field_small_operators.h | Contains the Gudhi::persistence_fields::Multi_field_operators_with_small_characteristics class |
| Multi_field_small_shared.h | Contains the Gudhi::persistence_fields::Shared_multi_field_element_with_small_characteristics class |
| Z2_field.h | Contains the Gudhi::persistence_fields::Z2_field_element class |
| Z2_field_operators.h | Contains the Gudhi::persistence_fields::Z2_field_operators class |
| Zp_field.h | Contains the Gudhi::persistence_fields::Zp_field_element class |
| Zp_field_operators.h | Contains the Gudhi::persistence_fields::Zp_field_operators class |
| Zp_field_shared.h | Contains the Gudhi::persistence_fields::Shared_Zp_field_element class |
| Functions | |
| Cartesian_product.h | |
| Constant_function.h | |
| Embed_in_Rd.h | |
| Function_affine_plane_in_Rd.h | |
| Function_chair_in_R3.h | |
| Function_iron_in_R3.h | |
| Function_lemniscate_revolution_in_R3.h | |
| Function_moment_curve_in_Rd.h | |
| Function_Sm_in_Rd.h | |
| Function_torus_in_R3.h | |
| Function_whitney_umbrella_in_R3.h | |
| Linear_transformation.h | |
| Negation.h | |
| PL_approximation.h | |
| random_orthogonal_matrix.h | |
| Translate.h | |
| IO | |
| build_mesh_from_cell_complex.h | |
| Mesh_medit.h | |
| output_debug_traces_to_html.h | |
| output_meshes_to_medit.h | |
| Permutahedral_representation | |
| Combination_iterator.h | |
| face_from_indices.h | |
| Integer_combination_iterator.h | |
| Ordered_set_partition_iterator.h | |
| Permutahedral_representation_iterators.h | |
| Permutation_iterator.h | |
| Set_partition_iterator.h | |
| Simplex_comparator.h | |
| Size_range.h | |
| Persistence_matrix | |
| allocators | |
| entry_constructors.h | Contains different versions of Gudhi::persistence_matrix::Entry factories |
| columns | |
| chain_column_extra_properties.h | Contains the Gudhi::persistence_matrix::Chain_column_extra_properties class and Gudhi::persistence_matrix::Dummy_chain_properties structure |
| column_dimension_holder.h | Contains the Gudhi::persistence_matrix::Column_dimension_holder class and Gudhi::persistence_matrix::Dummy_dimension_holder structure |
| column_utilities.h | Contains helper methods for column addition and column hasher |
| entry_types.h | Contains the Gudhi::persistence_matrix::Entry, Gudhi::persistence_matrix::Entry_column_index and Gudhi::persistence_matrix::Entry_field_element classes, as well as the Gudhi::persistence_matrix::Dummy_entry_column_index_mixin and Gudhi::persistence_matrix::Dummy_entry_field_element_mixin structures. Also defines the std::hash method for Gudhi::persistence_matrix::Entry |
| heap_column.h | Contains the Gudhi::persistence_matrix::Heap_column class. Also defines the std::hash method for Gudhi::persistence_matrix::Heap_column |
| intrusive_list_column.h | Contains the Gudhi::persistence_matrix::Intrusive_list_column class. Also defines the std::hash method for Gudhi::persistence_matrix::Intrusive_list_column |
| intrusive_set_column.h | Contains the Gudhi::persistence_matrix::Intrusive_set_column class. Also defines the std::hash method for Gudhi::persistence_matrix::Intrusive_set_column |
| list_column.h | Contains the Gudhi::persistence_matrix::List_column class. Also defines the std::hash method for Gudhi::persistence_matrix::List_column |
| naive_vector_column.h | Contains the Gudhi::persistence_matrix::Naive_vector_column class. Also defines the std::hash method for Gudhi::persistence_matrix::Naive_vector_column |
| row_access.h | Contains the Gudhi::persistence_matrix::Row_access class and Gudhi::persistence_matrix::Dummy_row_access structure |
| set_column.h | Contains the Gudhi::persistence_matrix::Set_column class. Also defines the std::hash method for Gudhi::persistence_matrix::Set_column |
| unordered_set_column.h | Contains the Gudhi::persistence_matrix::Unordered_set_column class. Also defines the std::hash method for Gudhi::persistence_matrix::Unordered_set_column |
| vector_column.h | Contains the Gudhi::persistence_matrix::Vector_column class. Also defines the std::hash method for Gudhi::persistence_matrix::Vector_column |
| Base_matrix.h | Contains the Gudhi::persistence_matrix::Base_matrix class |
| Base_matrix_with_column_compression.h | Contains the Gudhi::persistence_matrix::Base_matrix_with_column_compression class |
| base_pairing.h | Contains the Gudhi::persistence_matrix::Base_pairing class and Gudhi::persistence_matrix::Dummy_base_pairing structure |
| base_swap.h | Contains the Gudhi::persistence_matrix::Base_swap class and Gudhi::persistence_matrix::Dummy_base_swap structure |
| Boundary_matrix.h | Contains the Gudhi::persistence_matrix::Boundary_matrix class |
| Chain_matrix.h | Contains the Gudhi::persistence_matrix::Chain_matrix class |
| chain_pairing.h | Contains the Gudhi::persistence_matrix::Chain_pairing class and Gudhi::persistence_matrix::Dummy_chain_pairing structure |
| chain_rep_cycles.h | Contains the Gudhi::persistence_matrix::Chain_representative_cycles class and Gudhi::persistence_matrix::Dummy_chain_representative_cycles structure |
| chain_vine_swap.h | Contains the Gudhi::persistence_matrix::Chain_barcode_swap and Gudhi::persistence_matrix::Chain_vine_swap classes, as well as the Gudhi::persistence_matrix::Dummy_chain_vine_swap and Gudhi::persistence_matrix::Dummy_chain_vine_pairing structures |
| Id_to_index_overlay.h | Contains the Gudhi::persistence_matrix::Id_to_index_overlay class |
| index_mapper.h | Contains the Gudhi::persistence_matrix::Index_mapper class and Gudhi::persistence_matrix::Dummy_index_mapper structure |
| matrix_dimension_holders.h | Contains the Gudhi::persistence_matrix::Matrix_max_dimension_holder Gudhi::persistence_matrix::Matrix_all_dimension_holder classes and the Gudhi::persistence_matrix::Dummy_matrix_dimension_holder structure |
| matrix_row_access.h | Contains the Gudhi::persistence_matrix::Matrix_row_access class and Gudhi::persistence_matrix::Dummy_matrix_row_access structure |
| Position_to_index_overlay.h | Contains the Gudhi::persistence_matrix::Position_to_index_overlay class |
| RU_matrix.h | Contains the Gudhi::persistence_matrix::RU_matrix class |
| ru_pairing.h | Contains the Gudhi::persistence_matrix::RU_pairing class and Gudhi::persistence_matrix::Dummy_ru_pairing structure |
| ru_rep_cycles.h | Contains the Gudhi::persistence_matrix::RU_representative_cycles class and Gudhi::persistence_matrix::Dummy_ru_representative_cycles structure |
| ru_vine_swap.h | Contains the Gudhi::persistence_matrix::RU_vine_swap class, as well as the Gudhi::persistence_matrix::Dummy_ru_vine_swap and Gudhi::persistence_matrix::Dummy_ru_vine_pairing structures |
| Persistent_cohomology | |
| Field_Zp.h | |
| Multi_field.h | |
| Persistent_cohomology_column.h | |
| Simplex_tree | |
| filtration_value_utils.h | |
| hooks_simplex_base.h | |
| indexing_tag.h | |
| serialization_utils.h | |
| Simplex_tree_iterators.h | |
| Simplex_tree_node_explicit_storage.h | |
| simplex_tree_options.h | |
| Simplex_tree_siblings.h | |
| Simplex_tree_star_simplex_iterators.h | |
| Skeleton_blocker | |
| internal | |
| Top_faces.h | |
| Trie.h | |
| iterators | |
| Skeleton_blockers_blockers_iterators.h | |
| Skeleton_blockers_edges_iterators.h | |
| Skeleton_blockers_iterators.h | |
| Skeleton_blockers_simplices_iterators.h | |
| Skeleton_blockers_triangles_iterators.h | |
| Skeleton_blockers_vertices_iterators.h | |
| Skeleton_blocker_complex_visitor.h | |
| Skeleton_blocker_link_superior.h | |
| Skeleton_blocker_off_io.h | |
| Skeleton_blocker_simple_geometric_traits.h | |
| Skeleton_blocker_simple_traits.h | |
| Skeleton_blocker_simplex.h | |
| Skeleton_blocker_sub_complex.h | |
| Tangential_complex | |
| config.h | |
| Simplicial_complex.h | |
| utilities.h | |
| Witness_complex | |
| all_faces_in.h | |
| allocator.h | |
| Alpha_complex.h | |
| Alpha_complex_3d.h | |
| Alpha_complex_options.h | |
| Bitmap_cubical_complex.h | |
| Bitmap_cubical_complex_base.h | |
| Bitmap_cubical_complex_periodic_boundary_conditions_base.h | |
| Bottleneck.h | |
| Cech_complex.h | |
| Cech_complex_blocker.h | |
| choose_n_farthest_points.h | |
| Clock.h | |
| common_persistence_representations.h | This file contain an implementation of some common procedures used in the Persistence_representations module |
| console_color.h | |
| Coxeter_triangulation.h | |
| Debug_utils.h | |
| distance_functions.h | Global distance functions |
| Edge_contraction.h | |
| Euclidean_strong_witness_complex.h | |
| Euclidean_witness_complex.h | |
| filtered_zigzag_persistence.h | Contains the implementation of the Gudhi::zigzag_persistence::Default_filtered_zigzag_options structure and the Gudhi::zigzag_persistence::Filtered_zigzag_persistence_with_storage and Gudhi::zigzag_persistence::Filtered_zigzag_persistence classes |
| Flag_complex_edge_collapser.h | |
| Freudenthal_triangulation.h | |
| GIC.h | |
| Graph_matching.h | |
| graph_simplicial_complex.h | Graph simplicial complex methods |
| Hasse_complex.h | |
| Implicit_manifold_intersection_oracle.h | |
| Incremental_delaunay.h | |
| Internal_point.h | |
| Kd_tree_search.h | |
| Lazy_toplex_map.h | |
| Manifold_tracing.h | |
| Matrix.h | Contains Gudhi::persistence_matrix::Matrix class |
| MEB_filtration.h | |
| Neighbors_finder.h | |
| Null_output_iterator.h | |
| Off_reader.h | |
| Permutahedral_representation.h | |
| Persistence_graph.h | |
| Persistence_heat_maps.h | |
| persistence_interval.h | Contains Gudhi::persistence_matrix::Persistence_interval class |
| Persistence_intervals.h | |
| Persistence_intervals_with_distances.h | |
| Persistence_landscape.h | |
| Persistence_landscape_on_grid.h | |
| persistence_matrix_options.h | Contains the options for the matrix template |
| Persistence_on_a_line.h | |
| Persistence_on_rectangle.h | |
| Persistence_vectors.h | |
| Persistent_cohomology.h | |
| pick_n_random_points.h | |
| Point.h | |
| Points_3D_off_io.h | |
| Points_off_io.h | |
| PSSK.h | |
| random.h | |
| random_point_generators.h | |
| read_persistence_from_file.h | |
| reader_utils.h | This file includes common file reader for GUDHI |
| Rips_complex.h | |
| ripser.h | |
| simple_mdspan.h | |
| Simple_object_pool.h | |
| Simplex_tree.h | |
| Skeleton_blocker.h | |
| Skeleton_blocker_complex.h | |
| Skeleton_blocker_contractor.h | |
| Skeleton_blocker_geometric_complex.h | |
| Skeleton_blocker_link_complex.h | |
| Skeleton_blocker_simplifiable_complex.h | |
| Sliced_Wasserstein.h | |
| Sparse_rips_complex.h | |
| sparsify_point_set.h | |
| Sphere_circumradius.h | |
| Strong_witness_complex.h | |
| Tangential_complex.h | |
| Toplex_map.h | |
| uint128.h | |
| Unitary_tests_utils.h | |
| Witness_complex.h | |
| writing_persistence_to_file.h | |
| zigzag_persistence.h | Contains the implementation of the Gudhi::zigzag_persistence::Zigzag_persistence class |